NGS data analysis: basic QC — Константин Оконечников

Константин Оконечников, Max Planck Institute for Infection Biology Слайды: During the seminar participants will be challenged to apply programming skills to perform basic quality control of next generation sequencing dataset. The following concepts will be explained: BAM/SAM format, pysam and pyplot libraries, coverage, GC-content. Examples of practical tasks will include: • GC-content computation • Duplication rate