Torsion Angles | Ramachandran Plot | Protein Folding Basics
Overview of the different torsion angles
Bond lengths, bond angles, and torsion angles
A torsion angle, also known as a dihedral angle, is formed by three consecutive bonds in a molecule and defined by the angle created between the two outer bonds. The backbone of a protein has three different torsion angles.
The phi-angle (φ) - around the N-Cα bond
The psi-angle (ψ) - around the Cα-C bond
The omega-angle (ω) - around the peptide bond between C and N.
The ω-bond has a slightly double-bond character and is therefore almost always 180 degrees. The structure of a protein is mainly formed by the φ- and ψ-angles.
Every secondary structure element forces the backbone into a specific range of torsion angles, this can be visualized in a ramachandran plot.
Side chains can also contain torsion angles, they are indicated as chi-angles.
Keywords:
Alpha helices are compatible with:
A) All possible phi-psi angle combinations
B) A limited range of phi-psi angle combinations
C) A limited range of phi angles with all possible psi angles
D) A limited range of psi angles with all possible phi angles.
#RamachandranPlot #bioinformatics #computationalBiology #proteinFolding #aminoAcids #polypeptide #peptideBond #NikolaysGeneticsLessons #protein #aminoAcid #peptide #disulfideBridges #covalentBounding #ionicBounding #hydrophobicInteraction #proteinStructure #proteinSequence #proteins #Polypeptides #ImidazolRing #condensationSynthesis #peptides #globularProteins #fibrousProteins #Genetics
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